CoGe: GEvo

Add Sequence Merge Previous GEvo Analysis (paste in URL): Merge
Change order by dragging boxes

Sequence 1: Display Order

Sequence 1 Options

Sequence 2: Display Order

Sequence 2 Options

Sequence 3: Display Order

Sequence 3 Options

Sequence 4: Display Order

Sequence 4 Options

Open all sequence option menus Close all sequence option menus Walk all sequences left Walk all sequences right

Apply distance to all CoGe submissions? Pad CoGe Sequences with additional sequence:
E-mail GEvo results?

Alignment Algorithm:

Match Score (-r):
Mismatch Penalty (-q):
Gap Open Penalty (-G):
Gap Extension Penalty (-E):
Word Size (-W):
Filter query sequence (DUST/SEG) (-F):
Expectation value (-e):
Other Blast Parameters:

Other options:

Minimum HSP length for finding overlapped features:

Image Width (Pixels):
Feature Height (Pixels):
Padding between tracks (Pixels):
Color GC content green? (SLOW)	Yes No
Color masked and unsequenced NTs?	Yes No
Color wobble codon GC content:	Yes No
Color contigs red:	Yes No
Auto adjust overlapping features?	Yes No
Auto adjust overlapping HSPs (SLOW)?	Yes No
Draw high-quality images? (SLOW)	Yes No

Color features overlapped by HSPs?	Yes No
Color matches in HSPs?	Yes No
Label HSPs?
Label Genomic Features?
Labels font size:
Don't show HSPs with overlaps
Don't show HSPs that are shorter than nt. (0 means no limit)
Draw: Models
Show pre-annotated CNSs?	Yes No
Show pre-annotated Gene spaces?	Yes No

Change HSP colors (Click Color to Adjust)

HSP 1 color:

HSP 2 color:

HSP 3 color:

HSP 4 color:

HSP 5 color:

HSP 6 color:

Currently logged in as: public 2012-05-19 23:54:47